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Last couple of updates for the Beacon (covers #3 #7 #23)

See merge request pkp/beacon!9

Fixed issues related to MySQL 5.7 and other minor issues, added separate failure counter, saved ISSN URLs using JSON.

#14 Added a response fixer, to remove trailing content, such as <script> tags, and try to adjust slightly invalid XML content.
- Fixed minor bugs

- #23 Improved the country discovery

#21 Added a "removed" (not found while synchronizing) and a "disabled" column...

Closes #21

See merge request pkp/beacon!7

#21 Added a "removed" (not found while synchronizing) and a "disabled" column to the contexts table, updated the synchronizer to use a batch query.

#18 Added possibility to select the range of years to display in the report.

Closes #18

See merge request pkp/beacon!6

#20 Allowed the synchronization to proceed in case of a failure while requesting the Identity verb.

Closes #20

See merge request pkp/beacon!8

#13 Added extra information to the report and updated packages.

Closes #13

See merge request pkp/beacon!2

#9 Updated synchronizer to harvest all records.

Closes #9

See merge request pkp/beacon!3

#9 - Added records.published_date column, extracted from the "dc:date" and updated the code to use it (instead of the records.date, now renamed to update_date) when consolidating the count_spans.
- Added one more check to the endpoint merging strategy: if the contexts share the same name and ISSN the other checks are skipped
- Replaced the mass insert query builder and the transaction retrial by their Laravel counterparts
- Added ISSN validation

#15 Validated version before inserting, synchronized version using OAI...

Closes #15

See merge request pkp/beacon!5

#15 Validated version before inserting, synchronized version using OAI Identify, simplified extracting namespaced data, made the log processor less likely to fail in the middle of the process.

Feature/master/i1 refactoring

See merge request pkp/beacon!1

- Versions are updated and upgrades are logged

Updated context scanner to refresh old count_spans
Fixed minor bugs

- Added threshold limit to avoid harvesting all the journal's articles when searching for a ISSN
- Removed the "No matching records in this repository" from the error list

- Added maxRetryAttempts to the synchronizer and scanner commands (which reset accumulated errors on successful attempts)
- Added temporary export to generate the map
- Added country_tld field
- Updated packages

Added connection timeout limit.
Moved pagination code to an external package
Updated packages.

asmecher/beacon#1 Refactored code, added linting (phpcs) and updated packages.